imbie intersnp uni


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How to

Here are 6 GWIA strategies to show the usage of the software. Notice that only the relevant options are presented in the selectionfile.

I. Strategy
All pairs of SNPs with  at least one SNP among the top 10 single-marker results

Selectionfile_S1.txt


II. Strategy
All pairs of SNPs which are among the top 1000 single-marker results

Selectionfile_S2.txt


III. Strategy
All pairs of SNPs which are among the top 50,000 single-marker results and also lie in a coding region  of a gene

Selectionfile_S3.txt


IV. Strategy
All pairs of non-synonymous SNPs

Selectionfile_S4.txt


V. Strategy
All pairs of SNPs which are among the top 50,000 single-marker results and also lie in the same pathway

Selectionfile_S5.txt

VI. Strategy
Pathwayanalysis with fisher score.

Selectionfile_S6.txt

VII. Strategy
Case-Only-Analysis

Selectionfile_S7.txt

Test for supra-multiplicativity of SNP sets

Selectionfile_S8.txt

Rare Variant Analysis: Genes

sfileRgenes.txt

Rare Variant Analysis: LD-Blocks

sfileRld.txt